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Tuning the Distribution Parameters for Better Performance


By adjusting the data distribution of the matrices, users may be able to achieve 10-50 % greater performance than by using the standard data distribution suggested in section 5.1.1.

The performance attained using the standard data distribution is usually fairly close to optimal; hence, if one is getting poor performance, it is unlikely that modifying the data distribution will solve the performance problem.

An optimal data distribution depends upon several factors including the performance characteristics of the hardware, the ScaLAPACK routine invoked, and (to a certain extent) the problem size. The algorithms currently implemented in ScaLAPACK fall into two main classes.

The first class of algorithms is distinguished by the fact that at each step a block of rows or columns is replicated in all process rows or columns. Furthermore, the process row or column source of this broadcast operation is the one immediately following -- or preceding depending on the algorithm -- the process row or column source of the broadcast operation performed at the previous step of the algorithm. The QR factorization and the right looking variant of the LU factorization are typical examples of such algorithms, where it is thus possible to establish and maintain a communication pipeline in order to overlap computation and communication. The direction of the pipeline determines the best possible shapes of the process grid. For instance, the LU, QR, and QL factorizations perform better for ``flat'' process grids (tex2html_wrap_inline17130). These factorizations perform a reduction operation for each matrix column for pivoting in the LU factorization and for computing the Householder transformation in the QR and QL decompositions. Moreover, after this reduction has been performed, it is important to update the next block of columns as fast as possible. This update is done by broadcasting the current block of columns using a ring topology, that is, feeding the ongoing communication pipe. Similarly, the performance of the LQ and RQ factorizations take advantage of ``tall'' grids (tex2html_wrap_inline17142) for the same, but transposed, reasons.

The second group of algorithms is characterized by the physical transposition of a block of rows and/or columns at each step. Square or near square grids are more adequate from a performance point of view for these transposition operations. Examples of such algorithms implemented in ScaLAPACK include the right-looking variant of the Cholesky factorization, the matrix inversion algorithm, and the reductions to bidiagonal form (PxGEBRD), to Hessenberg form (PxGEHRD), and to tridiagonal form (PxSYTRD). It is interesting to note that if square grids are more efficient for these matrix reduction operations, the corresponding eigensolver usually prefers flatter grids.

Table 5.17 summarizes this paragraph and provides suggestions for selecting the most appropriate shape of the logical tex2html_wrap_inline12182 process grid from a performance point of view. The results presented in this table may need to be refined depending on the physical characteristics of the physical interconnection network.

Table 5.17: Process grid suggestions for some ScaLAPACK drivers

Assume that at most P nodes are available. A natural question is: Could we decide which tex2html_wrap_inline17180 process grid should be used? Similarly, depending on the value of P, it is not always possible to factor tex2html_wrap_inline17184 to create an appropriate grid shape. For example, if the number of nodes available is a prime number and a square grid is suitable with respect to performance, it may be beneficial to let some nodes remain idle so that the remaining nodes can be arranged in a ``squarer'' grid.

If the BLACS implementation or the interconnection network features high latency, a one-dimensional data distribution will improve the performance for small and medium problem sizes. The number of messages significantly impacts the performance achieved for small problem sizes, whereas the total message volume becomes a dominant factor for medium-sized problems. The performance cost due to floating-point operations dominates for large problem sizes. One-dimensional data distributions reduce the total number of messages exchanged on the interconnection network but increase the total volume of message traffic. Therefore, one-dimensional data distributions are better for small problem sizes but are worse for large problem sizes, especially when one is using eight or more processors.

Determining optimal, or near-optimal, distribution block sizes with respect to performance   for a given platform is a difficult task. However, it is empirically true that as soon as a good block size or even a set of good distribution parameters is found, the performance is not highly sensitive to small changes of the values of these parameters.

next up previous contents index
Next: Performance of Banded and Up: Performance Improvement Previous: Choosing a Faster BLAS

Susan Blackford
Tue May 13 09:21:01 EDT 1997